log

short-read wgs pipeline notes · public-safe summary

created the jrti workspace and wrote the first architecture for a reproducible short-read whole-genome analysis pipeline.
preserved the personal genome project stand-in archive on the external ssd, verified its checksum, and extracted six paired fastq files across lanes l6 through l8.
set the next direction: use nextflow plus nf-core/sarek, keep private genome data out of the public repo, and publish plain-english run summaries before building a dashboard.